PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005867P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 269aa    MW: 29379.8 Da    PI: 6.3009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005867P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-2091142156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+++GVr+++ +g+W+AeIrd    g+r r +lg+++taeeAa  ++ a++kl+g+
  MELO3C005867P1  91 SKFRGVRRRP-WGKWAAEIRDT---GRRVRLWLGTYDTAEEAAMVYDSAALKLRGP 142
                     79********.**********3...346**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.25E-3291151No hitNo description
SuperFamilySSF541715.1E-2291150IPR016177DNA-binding domain
PfamPF008471.1E-1491141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2992150IPR001471AP2/ERF domain
PROSITE profilePS5103223.76292149IPR001471AP2/ERF domain
SMARTSM003806.2E-3792155IPR001471AP2/ERF domain
PRINTSPR003673.3E-1093104IPR001471AP2/ERF domain
PRINTSPR003673.3E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEVSTILRRK PISEPPGNFH GRSSTGSRIV RISMTDPDAT DSSSSDEDTL NYPRRRVKRY  60
EIELSVGTAG DGGGCGARKR KRKRKAVGNV SKFRGVRRRP WGKWAAEIRD TGRRVRLWLG  120
TYDTAEEAAM VYDSAALKLR GPAALTNFPT HTPPPSTGDE PSSPTNISSP TSVLYRTQFT  180
ECSSSYRAVN DSPVVDCPFS DDIFKSSVLE SPLFPEYQST LITEAPWIDA DGGARSSDLV  240
AAAGSVEIVE DHDYFEEILM GSDPLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-20911491372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884KRKRKRK
27984RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437573.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotQ9SUE36e-42CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1S3AUH00.0A0A1S3AUH0_CUCME; ethylene-responsive transcription factor CRF1-like
STRINGXP_008437573.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2449833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.13e-29cytokinin response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]