PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005961P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 475aa    MW: 52635.5 Da    PI: 6.1504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005961P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00131633219
                    EETTTTEEESSHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                    +C++Cgk F ++ ++  H
  MELO3C005961P1 16 VCHNCGKDFFSWKSFLEH 33
                    6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.27E-6203226No hitNo description
PfamPF139121.6E-9204228IPR007087Zinc finger, C2H2
SMARTSM003550.13204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SuperFamilySSF576673.27E-6282309No hitNo description
PfamPF139125.9E-12286310IPR007087Zinc finger, C2H2
SMARTSM003551287309IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182287309IPR007087Zinc finger, C2H2
PROSITE patternPS000280289309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MYALRTNPNR LKTCRVCHNC GKDFFSWKSF LEHGKCSTTS DDDLDDSLLS SPPCSDDDDE  60
DECTATPRRP SGSNSNNNWS KRKRSLRVKV GSPASNEEED LANCLMMLSN GRVVEPMLVE  120
GEAEGDADAD AEESCASASK EDHHHLLLQQ QQDHNHHRNY NYNNIIRKPI NFIPPLSYRL  180
PDTEEDNNNN KAKGTVGGGG KGMFECKACK KVFNSHQALG GHRASHKKVK GCFAARLDHM  240
DIDSRENDDV YEDSLFPTKP NHKSSSSSAF HYENPLASAS KRKTKVHECS ICHRIFSSGQ  300
ALGGHKRCHW ITSNAAAAAA AAAAAEAPKF HDKRVVAPPP SNFDTITANS ALVLPLDLKL  360
DLNLPAPADE VRRPAMDVST EIHLQSWVCS KKDKVQENEC EEEDEEEQKE KKMMRKNEEE  420
KKIVNNEDVE EEAESKVKLA KLSELKDMNM SAGNSSPWLQ VGIASTTHVV TPDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437784.10.0PREDICTED: uncharacterized protein LOC103483116
TrEMBLA0A1S3AVE60.0A0A1S3AVE6_CUCME; uncharacterized protein LOC103483116
STRINGXP_008437784.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF751188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-23C2H2-like zinc finger protein