PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006216P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 148aa    MW: 16656.4 Da    PI: 8.9277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006216P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.6e-1334124598
                     -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                     l++s+v    +lvlp kf  ++   ++   +   +l   +g++W++ + y +++g+ + +k W++Fv++n Lk+gD +vF+l   + s  +++v+
  MELO3C006216P1  34 LSKSHVAPIYNLVLPAKFH-SIlpAIV--IP--AVL-LCRGKKWKIDY-YGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLeCSsSILKFRVQ 121
                     5667777777788888886.4433222..22..333.348********.88888889999*********************65355577777777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  MELO3C006216P1 122 ILR 124
                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-1426124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1526124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.7330126IPR003340B3 DNA binding domain
CDDcd100171.41E-1533124No hitNo description
SMARTSM010194.3E-434126IPR003340B3 DNA binding domain
PfamPF023623.6E-1135124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MQSERNPPTE LPTIEPQNGE TMPLSGKPYH AFILSKSHVA PIYNLVLPAK FHSILPAIVI  60
PAVLLCRGKK WKIDYYGNRR GKALDSKQWR KFVNDNCLKS GDACVFELLE CSSSILKFRV  120
QILRGDIPLE LHDKFSGETK ETPIHLD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-173LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-173LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650806.11e-102PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0A0L3V31e-100A0A0A0L3V3_CUCSA; Uncharacterized protein
STRINGXP_008345126.12e-42(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-08B3 family protein