PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006333P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 165aa    MW: 18620.6 Da    PI: 10.714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006333P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-1994142153
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                     s+y+GVr++k +grW+AeIrd + +   r+r++lg++ taeeA +a++  r+++
  MELO3C006333P1  94 SRYRGVRQRK-WGRWAAEIRDpF-K---RARVWLGTYNTAEEASRAYESKRLEF 142
                     79*******9.**********55.3...5********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.5E-321156IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541711.18E-1794146IPR016177DNA-binding domain
PfamPF008475.6E-1394142IPR001471AP2/ERF domain
CDDcd000186.57E-2394148No hitNo description
Gene3DG3DSA:3.30.730.101.3E-2295147IPR001471AP2/ERF domain
SMARTSM003803.0E-1695149IPR001471AP2/ERF domain
PROSITE profilePS5103220.8595157IPR001471AP2/ERF domain
PRINTSPR003677.9E-1196107IPR001471AP2/ERF domain
PRINTSPR003677.9E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSRKIRVICN DPDGTDSSSS ENERDESNSS KSKRIVREIH FPLLPSSNST SNSSIHDEET  60
SHTSSHHTNN GGKPQQLTNI RVLTKTLTPE RTTSRYRGVR QRKWGRWAAE IRDPFKRARV  120
WLGTYNTAEE ASRAYESKRL EFQSAMAAAP KSPTRFKGSH VLGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1396136647ATERF1
3gcc_A6e-1396136647ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439360.11e-119PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A1S3AYM81e-118A0A1S3AYM8_CUCME; ethylene-responsive transcription factor ERF118-like
STRINGXP_008439360.11e-118(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-22ERF family protein