PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006366P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 238aa    MW: 27960.3 Da    PI: 9.2966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006366P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-18855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+ +G g+W+++ar  g++R +k+c++rw +yl
   MELO3C006366P1  8 KGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding521.6e-1661105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   MELO3C006366P1  61 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 105
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.083159IPR017930Myb domain
SuperFamilySSF466892.75E-307102IPR009057Homeodomain-like
SMARTSM007175.5E-16757IPR001005SANT/Myb domain
PfamPF002496.5E-17855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-24962IPR009057Homeodomain-like
CDDcd001678.97E-111055No hitNo description
PROSITE profilePS5129419.39960110IPR017930Myb domain
SMARTSM007171.4E-1460108IPR001005SANT/Myb domain
PfamPF002499.2E-1461105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2463110IPR009057Homeodomain-like
CDDcd001672.41E-965106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEDEVWRKGP WTAEEDRLLM EYVRIYGEGR WNSVARLAGL KRNGKSCRLR WVNYLRPDLK  60
RGQITPHEES IILELHARWG NRWSTIARSL PGRTDNEIKN YWRTHFKKKV KDSSDANGKA  120
KARLLRRQQF HQQQLQQQQQ QQQQQFNPME MNKIMALLEE QHDDKNNKLE TLSSSSSASE  180
AEKKQNITNF YTQTTDNEQS LISELNNNGF VLPEMLNEGL DVGWAMELGG YPWQWQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-28811027128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438441.11e-176PREDICTED: transcription factor MYB24-like
TrEMBLA0A1S3AW201e-175A0A1S3AW20_CUCME; transcription factor MYB24-like
STRINGXP_008438441.11e-175(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.13e-74myb domain protein 79