PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006452P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 170aa    MW: 19535.4 Da    PI: 6.5702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006452P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000133961123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  MELO3C006452P1 39 YECTFCKRGFTNAQALGGHMNIH 61
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-73665No hitNo description
Gene3DG3DSA:3.30.160.602.3E-63665IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4683966IPR007087Zinc finger, C2H2
SMARTSM003550.00973961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDFGKQGSWD SSSDEYEPQD HHIHLKDDDN ENDPTKRPYE CTFCKRGFTN AQALGGHMNI  60
HRKDRAKAKH RNFIHSSSST HSNHDQFFPP IIPTQPTTPS YYHHPPPPSY RMYFDTAATN  120
FPIHPQITSP AVVNQELLGA NLSLQIDQNR GVWNNEELDL ELRLGHEYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439363.11e-126PREDICTED: zinc finger protein 7
TrEMBLA0A1S3AZA21e-125A0A1S3AZA2_CUCME; zinc finger protein 7
STRINGXP_008439363.11e-125(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein