PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006627P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 482aa    MW: 51516.6 Da    PI: 8.5493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006627P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-124974227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG+C yG+rC+F+H++
  MELO3C006627P1 49 DEADCIYYLRTGFCGYGSRCRFNHPR 74
                    6799********************96 PP
2zf-CCCH38.12.6e-1296120327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  MELO3C006627P1  96 QPVCQYYMRTGMCKFGASCKYHHPQ 120
                     689********************97 PP
3zf-CCCH36.21e-11141166227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++++G+Ck+G++CkF+H++
  MELO3C006627P1 141 GEKECSYYLKNGQCKFGATCKFHHPE 166
                     7899********************96 PP
4zf-CCCH38.91.5e-12304330127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++rtG Ck+G++C+++H+p
  MELO3C006627P1 304 PGQPECQYYMRTGDCKFGSSCRYHHPP 330
                     5789*********************97 PP
5zf-CCCH33.66.5e-11352376327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++C +f++ G Ck+G+ CkF H++
  MELO3C006627P1 352 APPCTHFMQRGMCKFGPACKFDHSM 376
                     689********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.384775IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-54774IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-104974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-65375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.36693121IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-793120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-795123IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-996120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-698122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61139167IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37303331IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6303330IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5307330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5309330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469349377IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7349376IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7352375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6353380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5354377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MKPYAHSIEG SHSDPSPEWT VSGPDTTSHG DSLWPLGSRD RDSYPERPDE ADCIYYLRTG  60
FCGYGSRCRF NHPRERSPAL GGSRLGGREY PERIGQPVCQ YYMRTGMCKF GASCKYHHPQ  120
QERGSLSPVS LNFYGYPLRP GEKECSYYLK NGQCKFGATC KFHHPEPAGL QFPAPSPVQV  180
TPIAGQVPAP SVYPPVQSPS AHSSQQYGVI LARPSLLSSP YVPGPYGPML VSPGVVQFPS  240
WSPYPAPMSP VASPSAQPSV GSGPLYGMAH VSPSASAFAG SYQPMPSAGP SSTSQKEHSF  300
PERPGQPECQ YYMRTGDCKF GSSCRYHHPP ELVTSRPSVV LSQLGLPLRP GAPPCTHFMQ  360
RGMCKFGPAC KFDHSMDRLS YSPSASSLAD MPVAPYPVGS VAGTLAPSSS SSELRPEHFS  420
GSRKDSNPSR MSSSMSTSSG LVGSTTSRTE MHSLSSVQRS SQSSGPSVGS TSSSTSAEGR  480
T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438828.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-150C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1S3AY170.0A0A1S3AY17_CUCME; zinc finger CCCH domain-containing protein 34
STRINGXP_008438828.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-141C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]