PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006641P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 251aa    MW: 28165.8 Da    PI: 9.8565
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006641P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.9e-102358340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W+++E e++++a +++G++ Wk++a+ +  +R+ +++
   MELO3C006641P1 23 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 58
                     6*****************99.*********.**98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.1571972IPR017884SANT domain
SuperFamilySSF466891.2E-101966IPR009057Homeodomain-like
SMARTSM007171.1E-42068IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-72358IPR009057Homeodomain-like
PfamPF002498.4E-92358IPR001005SANT/Myb domain
CDDcd001671.61E-72458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MESMLPFSDS LQKRKFADLL GPQWSKDEVE QFYEAYRKYG KDWKKVAAAV RNRSTEMVEA  60
LFTMNRAYLS LPEGTASVVG LIAMMTDHYS VLRDSESEQE SNEDSGAIRK PQKRLRGKSR  120
NSNLKGSDAH FGDASQSQLL PTNYGCLSLL KKRRSGIKPH AVGKRTPRVP VSYSYDKDGR  180
EKLFSPSKHN SKGKVDDPND DDVAHEIALV LTEASQRDGS PQLSQTPNPK IEGHVLSPIR  240
NDRMVIIHRF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-159LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-159LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134200.21e-158PREDICTED: protein ALWAYS EARLY 3 isoform X1
RefseqXP_011651046.11e-158PREDICTED: protein ALWAYS EARLY 3 isoform X3
SwissprotQ6A3329e-70ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A0A0L5711e-156A0A0A0L571_CUCSA; Uncharacterized protein
STRINGXP_008438872.11e-171(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-66DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]