PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006688P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 229aa    MW: 25576.1 Da    PI: 7.5962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006688P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.6e-2191141155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+ +++g
  MELO3C006688P1  91 SKYRGIRQRP-WGKWAAEIRDPQ----KgLRVWLGTYNTAEEAARAYDQAAIRIRG 141
                     89********.**********94....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-2391150IPR016177DNA-binding domain
PfamPF008472.5E-1491141IPR001471AP2/ERF domain
CDDcd000181.83E-3691150No hitNo description
Gene3DG3DSA:3.30.730.101.7E-3392150IPR001471AP2/ERF domain
PROSITE profilePS5103224.85692149IPR001471AP2/ERF domain
SMARTSM003803.4E-4092155IPR001471AP2/ERF domain
PRINTSPR003671.6E-1193104IPR001471AP2/ERF domain
PRINTSPR003671.6E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MCGGAIISDY VEPNPVVVDN LLWPDLDTTL FSDLLGLDLS GTQNYLFNNT TPSANVVHNI  60
PKQLSQVKKE RVEGNEGATS EMKKPQKVRK SKYRGIRQRP WGKWAAEIRD PQKGLRVWLG  120
TYNTAEEAAR AYDQAAIRIR GKKAKLNFPH PPPPPSLPLP LPLPPSLPQQ QQQQLPTTSA  180
TPFDVELKHQ ISTLESFLGL DPSPPVEPTA DLWWVDDLLT YQQQNLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-25911501373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438910.11e-166PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X1
TrEMBLA0A1S3AY541e-165A0A1S3AY54_CUCME; ethylene-responsive transcription factor RAP2-3 isoform X1
STRINGXP_008438910.11e-166(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-24ethylene-responsive element binding protein