PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C006781P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 1049aa MW: 114520 Da PI: 4.3598

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006781P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00083	14	36	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H MELO3C006781P1 14 HVCNKCGWPFPNPHPSAKHRRAH 36 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	16	36	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1049 aa Download sequence Send to blast
MEHRDQRQEN HGVHVCNKCG WPFPNPHPSA KHRRAHKRVC GTIEGFKLVE SEANALLTVV 60 SDDDVDHKIS SPKALGGRCG DDSVDGMKTK SKESEDEVFS DAVAEFSESV GPNKSMGDAL 120 YSSAAKMVVE DEISSSRTLK DKELHETTIN QSGCEQEKKV NQEFVNIEAE SKTPLSSSST 180 ENQKDESSVV AETYVDPLGN EQETKVNREL VDLETSSAST ENQNVENSVI VEPEQETKIN 240 QEYGNLETNF RNGNSVIPST DHINPTTTTG DLYPNDPETI ITALRQPQCS LPSPDRICDD 300 EDLDSCNNST EVAAASEKID KPSPKMEETI GISAEPLAHD GTFQSVVDND MFIHSEIPQS 360 VLPAVNPQSV VVSNVKPIDL TQVTYDARKE LEACRSNNLL ETDIIKGEND NVHLPSVSTD 420 LNTLDRPDAL VEDSENHKEV KLTNCVVQDP HEGVSDLEDN SKDPIPKGSY FTLQADPFDP 480 TSEVASFDTK IMESRQKQED MVKNVSVDVK GDCPSHSGQE AAEIPIQEMN SAQIKNVPSE 540 NEEHNKSQIL SDVAIGIDSI PSVSLSSEVE SVAPSKNSLD NLSENVSEVL FGEVWRGEVL 600 LPDDENKEGA CGKDFDTVQI HLPVDAHERK DNFVNEKDKF DNLNIAGVED KKDPPEEKIS 660 MGTDSTPQPA TNKENKCIAV AEEIAEESPR KISLIESIGS RKFDTSLASD TQESVKENDC 720 SSSVHVVCPS EVNADDGHYH IGDSSSVRDS SDVHANREGN LVSVSNEAVT GRSDTFQDGS 780 VTQLAGDGVA FETRKDGGVK TDMKPQLTSS LLDPSVDAIS QTDSLEGNWG SVSVLSTQSD 840 LLAVVDGEVT PQARAGAEET DLRKADAAPE RQHSDRSDLF EPPSFMTLVE PNGGGIPNSA 900 TTEIQTARNR EQPNPTSLQA GWFPSYTHVA NDSPGRKKNE AIIAKVTNWS AGKPHTALKN 960 LLDDAALENK QKSSPTPKDN LASMIQKDEK PSKKVDSITQ PKSPTSQLIN REFANEWNSP 1020 ARYPSDIRRE RRKGRPYWAQ FVCCSSVH*

Sequence ? help Back to Top

Protein Sequence Length: 1049 aa Download sequence Send to blast

MEHRDQRQEN HGVHVCNKCG WPFPNPHPSA KHRRAHKRVC GTIEGFKLVE SEANALLTVV  60
SDDDVDHKIS SPKALGGRCG DDSVDGMKTK SKESEDEVFS DAVAEFSESV GPNKSMGDAL  120
YSSAAKMVVE DEISSSRTLK DKELHETTIN QSGCEQEKKV NQEFVNIEAE SKTPLSSSST  180
ENQKDESSVV AETYVDPLGN EQETKVNREL VDLETSSAST ENQNVENSVI VEPEQETKIN  240
QEYGNLETNF RNGNSVIPST DHINPTTTTG DLYPNDPETI ITALRQPQCS LPSPDRICDD  300
EDLDSCNNST EVAAASEKID KPSPKMEETI GISAEPLAHD GTFQSVVDND MFIHSEIPQS  360
VLPAVNPQSV VVSNVKPIDL TQVTYDARKE LEACRSNNLL ETDIIKGEND NVHLPSVSTD  420
LNTLDRPDAL VEDSENHKEV KLTNCVVQDP HEGVSDLEDN SKDPIPKGSY FTLQADPFDP  480
TSEVASFDTK IMESRQKQED MVKNVSVDVK GDCPSHSGQE AAEIPIQEMN SAQIKNVPSE  540
NEEHNKSQIL SDVAIGIDSI PSVSLSSEVE SVAPSKNSLD NLSENVSEVL FGEVWRGEVL  600
LPDDENKEGA CGKDFDTVQI HLPVDAHERK DNFVNEKDKF DNLNIAGVED KKDPPEEKIS  660
MGTDSTPQPA TNKENKCIAV AEEIAEESPR KISLIESIGS RKFDTSLASD TQESVKENDC  720
SSSVHVVCPS EVNADDGHYH IGDSSSVRDS SDVHANREGN LVSVSNEAVT GRSDTFQDGS  780
VTQLAGDGVA FETRKDGGVK TDMKPQLTSS LLDPSVDAIS QTDSLEGNWG SVSVLSTQSD  840
LLAVVDGEVT PQARAGAEET DLRKADAAPE RQHSDRSDLF EPPSFMTLVE PNGGGIPNSA  900
TTEIQTARNR EQPNPTSLQA GWFPSYTHVA NDSPGRKKNE AIIAKVTNWS AGKPHTALKN  960
LLDDAALENK QKSSPTPKDN LASMIQKDEK PSKKVDSITQ PKSPTSQLIN REFANEWNSP  1020
ARYPSDIRRE RRKGRPYWAQ FVCCSSVH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439047.1	0.0	PREDICTED: titin homolog isoform X2
TrEMBL	A0A1S3AYF3	0.0	A0A1S3AYF3_CUCME; titin homolog isoform X2
STRING	XP_008439045.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19