PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006854P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 253aa    MW: 28829.9 Da    PI: 8.0291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006854P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-1082131354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h erEr+RR+++   +  Lr+llP  +   ++K   ++    Av+YIk+ 
  MELO3C006854P1  82 LMHRERERQRRQEMGALYMSLRTLLPLEF--IKGKRAISDQMNGAVNYIKHQ 131
                     58*************************65..*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1177152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.97979131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-781150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-783131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001385137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MYPLRKSEEK CFQISFNPHQ HIIPEDLIFG HHGSAAVGAA DNNNDNNSNN KNNGVKNLSM  60
ARRRKPLVET LEDDDQDHKI KLMHRERERQ RRQEMGALYM SLRTLLPLEF IKGKRAISDQ  120
MNGAVNYIKH QEQKIKEIEA KRDELKKMYN SNNFERSKLE ETSNCSFKIS CFDGGVVEIL  180
ITTIGFHGFP LSRILKVVVE QGLEVIRCGS TIINHKSIHT IQIEVNDPTS LDLAELGNKL  240
IEAVPLLRQV TD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439138.10.0PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1S3AYQ10.0A0A1S3AYQ1_CUCME; transcription factor bHLH118-like
STRINGXP_008439138.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.18e-33bHLH family protein