PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007017P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 65aa MW: 7426.65 Da PI: 10.9874

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007017P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.3	2.3e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g++KK +ELSvLCda++a+i+fss+gkl+ey++ MELO3C007017P1 10 RIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCT 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.076	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.48E-37	2	62	No hit	No description
SuperFamily	SSF55455	3.53E-29	2	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.4E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MGRGKIAIRR IENRTTRQVT FSKRRGGLFK KTHELSVLCD AQIALIVFSS NGKLFEYCTQ 60 TTWY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-19	1	59	1	59	MEF2C
5f28_B	1e-19	1	59	1	59	MEF2C
5f28_C	1e-19	1	59	1	59	MEF2C
5f28_D	1e-19	1	59	1	59	MEF2C
6byy_A	1e-19	1	59	1	59	MEF2 CHIMERA
6byy_B	1e-19	1	59	1	59	MEF2 CHIMERA
6byy_C	1e-19	1	59	1	59	MEF2 CHIMERA
6byy_D	1e-19	1	59	1	59	MEF2 CHIMERA
6bz1_A	1e-19	1	59	1	59	MEF2 CHIMERA
6bz1_B	1e-19	1	59	1	59	MEF2 CHIMERA
6bz1_C	1e-19	1	59	1	59	MEF2 CHIMERA
6bz1_D	1e-19	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-105	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-105	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658351.1	3e-38	PREDICTED: MADS-box protein FBP24 isoform X3
Refseq	XP_011658354.1	2e-38	PREDICTED: MADS-box protein FBP24 isoform X6
Swissprot	Q9ATE5	9e-31	FBP24_PETHY; MADS-box protein FBP24
TrEMBL	A0A1S3AYU5	1e-36	A0A1S3AYU5_CUCME; MADS-box protein FBP24
STRING	XP_004158672.1	1e-37	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	6e-28	MIKC_MADS family protein

Publications ? help Back to Top
Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]