PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007077P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YA

Protein Properties

Length: 170aa MW: 18946.1 Da PI: 9.5772

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007077P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2.1e-32	109	165	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF MELO3C007077P1 109 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGCGGRF 165 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.2E-35	107	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.843	108	168	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-27	110	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-23	111	133	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	113	133	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-23	142	165	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MTSSVHDYSD NGEADEQRKY SESQNHSSSV INGLNQPTPN QYVASPQVGA GHSMVPPAYP 60 YPDPYYRSIF TPYDAQPYPP QPYGGQPMVH LQLMGIQQAG VPLPTDAVEE PVFVNAKQYH 120 GILRRRQSRA KAESENKALK SRKPYLHESR HLHALRRARG CGGRFLKSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	108	166	1	59	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	4e-87	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	4e-87	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016899328.1	1e-123	PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	5e-63	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S4DTP4	1e-122	A0A1S4DTP4_CUCME; LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-7
STRING	XP_008439553.1	1e-122	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	9e-51	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]