PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007077P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 183aa    MW: 20414.3 Da    PI: 8.2055
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007077P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.22e-16109147140
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40 
                     +ep++VNaKQy++Il+RRq+Rak+e+e+k   ksrk   h
  MELO3C007077P2 109 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKVCKH 147
                     69***************************9.999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.7E-9107159IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.535108147IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-12110148IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860113133IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTSSVHDYSD NGEADEQRKY SESQNHSSSV INGLNQPTPN QYVASPQVGA GHSMVPPAYP  60
YPDPYYRSIF TPYDAQPYPP QPYGGQPMVH LQLMGIQQAG VPLPTDAVEE PVFVNAKQYH  120
GILRRRQSRA KAESENKALK SRKVCKHKHC LILKCWVCII VIGLPLCIPC CHTCMNLDIY  180
TR*
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-136LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-136LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022925987.16e-95nuclear transcription factor Y subunit A-7
RefseqXP_022925988.16e-95nuclear transcription factor Y subunit A-7
RefseqXP_023544362.16e-95nuclear transcription factor Y subunit A-7
RefseqXP_023544363.16e-95nuclear transcription factor Y subunit A-7
SwissprotQ84JP15e-44NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A1S4DTP41e-89A0A1S4DTP4_CUCME; LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-7
STRINGXP_008439553.12e-90(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.27e-32nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]