PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007255P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 221aa    MW: 25095.5 Da    PI: 9.236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007255P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.7e-32321751128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                     lp+G++F+P+d++++ e+L++kv+++k      +   + +i ++d    i++++P+ Lp  ++++ +  ++F+++ k+y++g+rk+r+       
  MELO3C007255P1  32 LPAGIKFDPSDQQIL-EHLEAKVKEDKqklhplI---HhFILTLDgddgICYTHPQYLP-GMRKDGEIRHYFHRSPKAYTSGTRKRRKvktadee 121
                     799**********99.99******9995554331...132333333445**********.556666777******************74555544 PP

             NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       ++ +W++tgk+++v + +g ++g kk+Lv+y   g+++k++kt+W+mh+y+l
  MELO3C007255P1 122 eGTDTRWHKTGKTRAVSDGSGGKIGFKKILVLYsnYGNQKKPKKTNWIMHQYHL 175
                     422678***************************655799999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-3225194IPR003441NAC domain
PROSITE profilePS5100529.85932194IPR003441NAC domain
PfamPF023651.3E-1433175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEAYGSIICP SCAYPLEIDE VNRSLVEDWG KLPAGIKFDP SDQQILEHLE AKVKEDKQKL  60
HPLIHHFILT LDGDDGICYT HPQYLPGMRK DGEIRHYFHR SPKAYTSGTR KRRKVKTADE  120
EEGTDTRWHK TGKTRAVSDG SGGKIGFKKI LVLYSNYGNQ KKPKKTNWIM HQYHLGVTEE  180
EKDGQWVASK VFFQLQPRQT SIISSNSMHQ IRGGEASSLV *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439804.11e-166PREDICTED: NAC domain-containing protein 10 isoform X1
SwissprotF4HY611e-86NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A1S3AZ731e-164A0A1S3AZ73_CUCME; NAC domain-containing protein 10 isoform X1
STRINGXP_008439804.11e-165(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.14e-89NAC domain containing protein 10