PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007267P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 247aa    MW: 27076.3 Da    PI: 9.9435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007267P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-202170255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr ++ +gr++AeIrdps+   + r++lg+f+taeeAa+a+++a+++++g
  MELO3C007267P1 21 HFRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDNAAREFRG 70
                    69*******.**********965...6************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.6832178IPR001471AP2/ERF domain
CDDcd000183.32E-312178No hitNo description
Gene3DG3DSA:3.30.730.104.2E-322178IPR001471AP2/ERF domain
PfamPF008473.4E-132170IPR001471AP2/ERF domain
SMARTSM003801.5E-402184IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-222179IPR016177DNA-binding domain
PRINTSPR003675.1E-112233IPR001471AP2/ERF domain
PRINTSPR003675.1E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAPREKAVAV KPNVGNVKEV HFRGVRKRPW GRYAAEIRDP SKKSRVWLGT FDTAEEAARA  60
YDNAAREFRG VKAKTNFPLP SDDKLLNLNN KINNINNNQS PSQSSTVESS SREQALMVDS  120
SPLDLNLGHG IGGLTTAGPI SFPFQRYQIP MIGEVFTRGI PPSNHVLYFD AALRTGMINS  180
HPNQRLHFDR IREAVSDFRR DFAGSGVQSD SDSSSVVDMN GQDLKPRGGS GGRLDLDLNF  240
PPPESA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-211779164ATERF1
3gcc_A2e-211779164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439819.10.0PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ404777e-44ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A1S3B0A21e-180A0A1S3B0A2_CUCME; ethylene-responsive transcription factor 4-like
STRINGXP_008439819.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.18e-26ERF domain protein 11
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]