PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007268P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 738aa    MW: 80724.9 Da    PI: 7.2226
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007268P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07190210425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C+f+a+ G+C  G++C+F H
  MELO3C007268P1 190 AICDFYAK-GWCIKGSSCSFLH 210
                     68******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.216187213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6188210IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5190210IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MDTKRHDKHL RSETVSTTEN SEVNKLSFVG ETENSGNIEF SRPSGKPLEK KEEQSHGECT  60
KVESPKCLKD KGTEDQEHTV GDKDVEALRN KDFGGSNYNK VPLCDSEVMV ATATNGSSAT  120
LEDSDIGSKN HSAGRSIGSK NPEIESEQAG MQLENGENQM APRSAASKKR SRSLSPVADV  180
NGEEKHPAAA ICDFYAKGWC IKGSSCSFLH IKNNAFDSDQ HSEERAGVAC LKKHAQLNEG  240
LQYNADVLKS PVIRHPPNSS LLKDSSLSLK FGLSSEIPRD FSQSQGWDGL HEINKILLHQ  300
REDSLLSALP DCQKLPSTNF GASFPISRGL SASRHELPPE FGLSSDGFTQ LGVMEEPANV  360
ACPRLLNDHL SPVRRTSLNS NPTLPTDAIL ASRFTTSNAS LFPFTSSSSA SLLGAHKMSI  420
IDREHHVSTP ASSLMRSSPF SASGSDNSFT HVPKNPSEYK TKYSLDDWEP SVPFRPSFFI  480
PSITTASQYD PFLDSMDVPR IVGGSYNVTL DRQGHKEASP LSTLQRASGN FVVPGSSKPE  540
FNDDTSSLSS HNKAADKNEK VGHLQGKDSI LLEPEIRGRF GIDGRNGSRT REDDHIGLTR  600
EKDVNKKKKM GTGGELKLPN ISLHEKDSEA DSDRQLGDMD GKHLLDGNAP KESKATRHFR  660
SALIELVKEI LKPKWREGHL KKDVHNTVVK KTFDKVLGAL QSHQVPTTAE SVKQYLSSSR  720
PKIEKLVEGY VSKYGKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1599608REKDVNKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439823.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
RefseqXP_008439825.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
RefseqXP_016899235.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A1S3AZM80.0A0A1S3AZM8_CUCME; protein FRIGIDA-ESSENTIAL 1 isoform X2
STRINGXP_008439820.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-33C3H family protein