PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007274P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 254aa MW: 27727.6 Da PI: 9.706

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007274P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.9e-39	23	79	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ MELO3C007274P1 23 TLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 79 689***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	15	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.3E-34	23	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MASSSRIMDK PRHHQQQQSS SGTLKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR 60 GGTLRNVPVG GGCRKNKRLK TSSSSSSSSL VNANSTSTPS QNPRLLLHTS INSTTAPNIV 120 SSSALNHTNS SMFFGLDSIG GGGGGLGFSS SGLLSHFNNP HQQPFNSNHF HHPTISFDRN 180 SHLLGNIDPN LMTSMKEIKI EDLNRLCQNQ TEQIDLSNFS DPSSIYWNSG TTTATGNWHD 240 PTNYNGSSVA SLF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439843.1	0.0	PREDICTED: dof zinc finger protein DOF1.7-like
TrEMBL	A0A1S3B0B7	0.0	A0A1S3B0B7_CUCME; dof zinc finger protein DOF1.7-like
STRING	XP_008439843.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	3e-35	Dof family protein