PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007349P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 354aa    MW: 39938.4 Da    PI: 8.3556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007349P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05136158223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      C+ Cg +F++++ L++H  + H
  MELO3C007349P1 136 ICQECGGVFKNSDALESHHLSkH 158
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.912135163IPR007087Zinc finger, C2H2
PROSITE patternPS000280137158IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-12161352No hitNo description
Gene3DG3DSA:3.90.228.106.7E-5178281IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MPEVWCTLKR SLSCSKSFLC DDVHEPEPIR DSNSKERTER DSSGCLRSKS NLRDIICGSK  60
RHSQKPSPRS SSRSLAMSEV LHTMIHEIES QIKRDNFFVP HEEKPRLKLH KISVTRNSHA  120
YSATSHSQFN DGYELICQEC GGVFKNSDAL ESHHLSKHAV RELLQGDSSR RVIELICKRN  180
WHMSKSHHIE KVFKVHSSPR TQSLFEVYRE MVKTKARELE NENPRCLVDG NELLRFYGTT  240
IACSLSAADG SQILCNLVNC GVCQILRHGF NGAFTCATSG KAFEGIAMNE DVRLRKALMV  300
CRVIAGRIEE DEESDNSGLD LSGGKTGRSS KREELYVFDS KAVLPCFVLT FKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439943.10.0PREDICTED: uncharacterized protein LOC103484579
RefseqXP_016899197.10.0PREDICTED: uncharacterized protein LOC103484579
RefseqXP_016899198.10.0PREDICTED: uncharacterized protein LOC103484579
TrEMBLA0A1S3B0L10.0A0A1S3B0L1_CUCME; uncharacterized protein LOC103484579
STRINGXP_008439943.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2444222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.14e-65C2H2 family protein