PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007400P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 85aa    MW: 9865.66 Da    PI: 11.9675
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007400P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.83.9e-312877251
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                    prlrWtp+LH++Fv+ave+LGG+e+AtPk +l++m+v+gLt++hvkSHLQ
  MELO3C007400P1 28 PRLRWTPDLHRCFVHAVERLGGEERATPKMVLQIMNVNGLTISHVKSHLQ 77
                    8************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3632484IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-292477IPR009057Homeodomain-like
SuperFamilySSF466891.38E-142678IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-232878IPR006447Myb domain, plants
PfamPF002497.0E-82977IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MRVSRQRVFH DINFKSPMVR PYVRSKMPRL RWTPDLHRCF VHAVERLGGE ERATPKMVLQ  60
IMNVNGLTIS HVKSHLQVQI GSFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-202977351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-202977351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-202977351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-202977351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818757e-81LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132627e-81LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134975.21e-48PREDICTED: probable transcription factor KAN2 isoform X1
RefseqXP_016899272.12e-48PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ700D91e-27MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A0A0KHB74e-50A0A0A0KHB7_CUCSA; Uncharacterized protein
STRINGXP_008439998.13e-51(Cucumis melo)
STRINGXP_004155673.12e-51(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93812840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-32G2-like family protein