PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007470P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 202aa MW: 22588.9 Da PI: 7.2168

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007470P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.8	6.1e-30	107	165	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YY+C+s gC vkk+ver+++d ++v++tYeg Hnhe MELO3C007470P1 107 LDDGYKWRKYGKKSVKNSPHPRNYYKCSSGGCGVKKRVERDRDDSSYVITTYEGVHNHE 165 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-32	94	167	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-28	100	167	IPR003657	WRKY domain
PROSITE profile	PS50811	31.491	102	167	IPR003657	WRKY domain
SMART	SM00774	1.3E-34	107	166	IPR003657	WRKY domain
Pfam	PF03106	3.8E-24	108	165	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MNSLQNPTFF FDHHQQLDQD SSSSFMDFLN FSGYPLPDFG LEAETTMFSL SEAGTGDGSR 60 SMKATSIDNN TIDDGWFEGK GVKRKKERGN GCNHKVAFIT KSELEILDDG YKWRKYGKKS 120 VKNSPHPRNY YKCSSGGCGV KKRVERDRDD SSYVITTYEG VHNHESPFLM YSNGSKLCHP 180 HPQPICPNSS SPDPYSSTTT L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-26	100	167	10	77	Probable WRKY transcription factor 4
2lex_A	7e-26	100	167	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-122	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-122	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440131.1	1e-150	PREDICTED: probable WRKY transcription factor 51
TrEMBL	A0A1S3AZZ8	1e-149	A0A1S3AZZ8_CUCME; probable WRKY transcription factor 51
STRING	XP_008440131.1	1e-150	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-39	WRKY DNA-binding protein 50