PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007523P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 278aa    MW: 31907.3 Da    PI: 8.742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007523P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-141771798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    ++pkkf++++g+    s  + l+ ++g +W+v+   + ++++ ++l++GW+eF +  gLk+g  +vF+ldg+s+f  +  +f+
  MELO3C007523P1  1 MIPKKFITDYGKF--LSNPICLKPPDGVEWKVES--TTTPNGtVWLRNGWQEFSNHYGLKSGSLLVFRLDGNSTF--HTLIFN 77
                    69********844..6778***************..66665559***************************9999..877776 PP
2B350.34.3e-16184265187
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     ffkv ++  + k++ l +p +fa++h ++k  + +l+      ++W+vkl  + + + + +++GW eF ++n+Lk+gD+++Fkl  +
  MELO3C007523P1 184 FFKVNIHMKSYKNSVLNIPLTFADNHLSSKMHTAKLM--V-GKKQWKVKL--KHYERCIRFSGGWAEFFRQNNLKSGDSCLFKLLTK 265
                     99*********************99966655544444..4.66*******..77777789***********************8653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.7E-6179IPR003340B3 DNA binding domain
CDDcd100171.30E-13177No hitNo description
PROSITE profilePS5086314.875179IPR003340B3 DNA binding domain
PfamPF023622.5E-11177IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-19186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-18280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-16179266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19180274IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-13183271No hitNo description
SMARTSM010193.4E-11184275IPR003340B3 DNA binding domain
PROSITE profilePS5086312.76184277IPR003340B3 DNA binding domain
PfamPF023622.7E-13184266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MIPKKFITDY GKFLSNPICL KPPDGVEWKV ESTTTPNGTV WLRNGWQEFS NHYGLKSGSL  60
LVFRLDGNST FHTLIFNQNC SEIQYSSNHV GDVEPNQEEY STRPQTEETE AKPEKIGFKI  120
AVKKSYIEGR YNMLIPKCFA RRHLNEEFGK IEIENSDEGI IPPSSPILAN NENVESTTPS  180
YDHFFKVNIH MKSYKNSVLN IPLTFADNHL SSKMHTAKLM VGKKQWKVKL KHYERCIRFS  240
GGWAEFFRQN NLKSGDSCLF KLLTKNESYC IFKVDIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-162LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-162LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A0KFK00.0A0A0A0KFK0_CUCSA; Uncharacterized protein
STRINGXP_004142021.11e-162(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-29B3 family protein