PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007559P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 205aa    MW: 23356.1 Da    PI: 9.6541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007559P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-19123172255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp+    r  r++lg+f taeeAa+a+++a+ +++g
  MELO3C007559P1 123 RFRGVRQRR-WGKWAAEIRDPR----RkVRVWLGTFQTAEEAARAYDRAAIEFRG 172
                     59****998.**********83....35***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-13123172IPR001471AP2/ERF domain
SMARTSM003801.1E-38123187IPR001471AP2/ERF domain
CDDcd000187.98E-32123183No hitNo description
PROSITE profilePS5103224.342123181IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21123182IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-30123182IPR001471AP2/ERF domain
PRINTSPR003673.0E-11124135IPR001471AP2/ERF domain
PRINTSPR003673.0E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSGFSGNFVT APFGSRLGVE EENSIMVSAL THVLTDSRIG LTHAQYQLLF SSNLDHNDDD  60
SNNNSGNVLW FPSAMDECKK CQFAGCLGCN YFEDGSNQNQ NVVKDEENDN KNKKKRRKKI  120
KGRFRGVRQR RWGKWAAEIR DPRRKVRVWL GTFQTAEEAA RAYDRAAIEF RGIGRAKLNF  180
PASDYQQNQI PQGYREPNLE EIKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-19124181663ATERF1
3gcc_A8e-19124181663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118NKKKRRKK
2112116KKKRR
3112117KKKRRK
4112118KKKRRKK
5113117KKRRK
6113118KKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440277.11e-152PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1S3B0B51e-151A0A1S3B0B5_CUCME; ethylene-responsive transcription factor ERF109-like
STRINGXP_008440277.11e-152(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2443133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-22redox responsive transcription factor 1