PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007619P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 469aa    MW: 52477.2 Da    PI: 6.5593
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007619P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.23.9e-94684652373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl++ f++AL +r ++    ++ +a+ ++ ++s ++++ +l+ l +f++++P+++f+
  MELO3C007619P1  68 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNtGNCKILAAItTAFSSSITTHTFSLMDLATFVDLTPWHRFG 162
                     79***************************************************9322233333314444444446777777777*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl... 181
                     + +aN aIl+a+eg + vH++D+++++++Q p+L++a+a+R e pp l++T+v+  + +      + ++ e+g +L +fA++ +v++ef+v+   
  MELO3C007619P1 163 FTAANVAILDAIEGYSSVHVVDLSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAVVAVKeaspmLELSYDELGAKLVNFARSKNVTMEFRVVpsc 257
                     ***************************************************9988665566766788889*********************9887 PP

            GRAS 182 vakrledleleeLrvkp.......gEalaVnlvlqlhrll............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                     +++ ++ l +e++rv++       +Eal+ n++++lh+++            d s s++s r+ +Lk+++sl P++vv+v+++ad +s+++++r+
  MELO3C007619P1 258 HTDGFARL-IEQIRVQHliygpesNEALVFNCHMMLHYIPeetlnpspspnfDMSSSTSSIRSMFLKAIRSLDPTIVVLVDEDADFTSSKLVTRL 351
                     44444444.555555555555599***************************988888888999******************************** PP

            GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                      +a++y +  +ds+++ lpr s++r ++E+  + ++i+nv+a+eg +r++r e +++W +r+++a F+ vp+ e+a++++k++l +++  g+ ++
  MELO3C007619P1 352 RSAFNYLWIPYDSMDSFLPRSSKQREWYEAD-ICWKIENVIAHEGVQRVQRLEPKGRWVQRMMNAKFRGVPFVEDAVSEVKTMLDEHA-AGWGLK 444
                     *******************************.********************************************************.999*** PP

            GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                     +e++ l+l+Wk++ +v+++aW
  MELO3C007619P1 445 KEEDHLLLTWKGHDVVFATAW 465
                     ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.77941447IPR005202Transcription factor GRAS
PfamPF035141.3E-9168465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MMQFSHTPQR FHQTTTTIPS SFSDISMSNK NQITPTTGPF RNRRPWPGLF PCSSKALGTC  60
LGDANCMEQL LVHCANAIES NDATLAQQIL WVLNNIAPPD GDSNQRLTSA FLRALVTRAT  120
NTGNCKILAA ITTAFSSSIT THTFSLMDLA TFVDLTPWHR FGFTAANVAI LDAIEGYSSV  180
HVVDLSLMHC MQIPTLIDAI ATRFEVPPLL KLTTVAVVAV KEASPMLELS YDELGAKLVN  240
FARSKNVTME FRVVPSCHTD GFARLIEQIR VQHLIYGPES NEALVFNCHM MLHYIPEETL  300
NPSPSPNFDM SSSTSSIRSM FLKAIRSLDP TIVVLVDEDA DFTSSKLVTR LRSAFNYLWI  360
PYDSMDSFLP RSSKQREWYE ADICWKIENV IAHEGVQRVQ RLEPKGRWVQ RMMNAKFRGV  420
PFVEDAVSEV KTMLDEHAAG WGLKKEEDHL LLTWKGHDVV FATAWVPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-506246782474Protein SHORT-ROOT
5b3h_B2e-506346729420Protein SHORT-ROOT
5b3h_E2e-506346729420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440362.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-175SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1S3B0Z70.0A0A1S3B0Z7_CUCME; scarecrow-like protein 32
STRINGXP_008440362.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77023347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-163GRAS family protein