PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007898P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WOX

Protein Properties

Length: 175aa MW: 20123.8 Da PI: 10.7012

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007898P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.8	1.2e-10	42	90	3	45
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHH CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVk 45 +R+t+t++q+++L+el+++ r psa+++++++++l +++ ++V+ MELO3C007898P1 42 SRWTPTTDQIRILKELYYNngVRSPSADQIQRISARLrqygKIEGKNVF 90 8**************98678*************999999999997 PP
2	Wus_type_Homeobox	78.3	1.1e-25	40	91	2	52
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfy 52 +++RWtPt++Qi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVf+ MELO3C007898P1 40 SSSRWTPTTDQIRILKELYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFF 91 789*************9779***************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	3.6E-8	42	90	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEHPAKQQQQ QQQQEQGIHD QGGEGGGGSN GKSGFLCRQS SSRWTPTTDQ IRILKELYYN 60 NGVRSPSADQ IQRISARLRQ YGKIEGKNVF FIGFKTIRLV KDRRKDSLQI PILLLLPLLL 120 LLIILKFLQL IIILIGSRKI IPPLLITNFL QLLLLRLWWP LGIWEIMDLW VCHF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8LL11	1e-32	WUS_PETHY; Protein WUSCHEL
STRING	XP_004158873.1	1e-38	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8241	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	8e-29	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]