PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007971P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 207aa    MW: 22136.9 Da    PI: 4.9272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007971P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0597118223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     kC  Cgk+F ++     H+r+H
  MELO3C007971P1  97 KCATCGKTFGSWKAVFGHLRSH 118
                     7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.05896123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEKDHDKSSP SGSSNGGDGG DHTPSKAITV THEDDVAVSS SSAPVRTIDI TLTLSPQESY  60
GRKRGRAEDH GGGSSSGSGQ KGKKKGELID PPSTAPKCAT CGKTFGSWKA VFGHLRSHPE  120
REYRGAFPPP KIWEEMLQQE TLRRQHGQGE GSSGGNVEGR ARLSSLPSGR GIEIDLNDPE  180
EQEANKDEFP FDLNEPAPEN EEEDDK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066GRKRGRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441135.11e-149PREDICTED: zinc finger protein ZAT4
TrEMBLA0A1S3B2981e-148A0A1S3B298_CUCME; zinc finger protein ZAT4
STRINGXP_008441135.11e-149(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.15e-14C2H2 family protein