PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008014P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 340aa    MW: 36591.9 Da    PI: 4.9131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008014P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-21133182255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g
  MELO3C008014P1 133 KYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAESAARAYDEAALRFRG 182
                     8********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-33132191IPR001471AP2/ERF domain
PROSITE profilePS5103225.528133190IPR001471AP2/ERF domain
CDDcd000181.98E-34133192No hitNo description
SMARTSM003803.8E-37133196IPR001471AP2/ERF domain
PfamPF008472.8E-14133182IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23133191IPR016177DNA-binding domain
PRINTSPR003676.5E-12134145IPR001471AP2/ERF domain
PRINTSPR003676.5E-12156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MADPEDNKAS EMFLNFSREM EMSAMVSALT HVVAGDVPDR DACYDSTWTS SSVSAPAEPS  60
NLHGGGGYKR GRTLALEDGG SVSTWPSSAA ISGDSSNVVI VRPQSGSATV ENSVYEYGGE  120
ITTAAEEPPA RRKYRGVRQR PWGKWAAEIR DPYKAARVWL GTFDTAESAA RAYDEAALRF  180
RGSKAKLNFP ENVRLRQLPT TEYPITHFTN SSPTNTVLAI PTHSEPIVSY RPTFNLQSSS  240
DASPGNFLNF SDGQLQTPID MYSEINFSSS SSMASSFYSS SAGQSNPQFS SSSSSSSSPM  300
VSLSFQPLSF PGRRDSAGDN EQYSTAGWSE FFNHATSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23132193466ATERF1
3gcc_A2e-23132193466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440983.10.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A1S3B3120.0A0A1S3B312_CUCME; ethylene-responsive transcription factor ABR1
STRINGXP_008440983.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.17e-28related to AP2 6l