PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008047P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 221aa    MW: 24485.5 Da    PI: 6.8049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008047P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08120161854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  MELO3C008047P1 120 AARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 161
                     6799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-14117171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.95E-11118166No hitNo description
SMARTSM003536.1E-12118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6120161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDPHHLSNPP PHLDRSAMDD HHILHHVHDL DSIWPSFLPF QLSDHHDQQL PTSSTHFLIG  60
YSTPSSGTGD DEEEPEEELG AMKEMMYKIA AMQPVDIDPS TIRKPKRRNV RISDDPQSIA  120
ARLRRERISE KIRILQRLVP GGTKMDTASM LDEAIRYVKF LKRQIRLLQS SQPPQQPSTS  180
GGAATAAGGG GWHFPLNKAN GSTSSSTSME NTPTITPTGW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899193.11e-162PREDICTED: transcription factor HEC3-like
TrEMBLA0A1S4DTA81e-160A0A1S4DTA8_CUCME; transcription factor HEC3-like
STRINGXP_008441041.11e-161(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.18e-47bHLH family protein