PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008318P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 429aa    MW: 47357.6 Da    PI: 4.5809
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008318P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1884134155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a++ ++g
  MELO3C008318P2  84 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIEAALAYDEAARTMYG 134
                     56*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-3084143No hitNo description
PfamPF008473.7E-1384134IPR001471AP2/ERF domain
SMARTSM003801.1E-3685148IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2085142IPR016177DNA-binding domain
PROSITE profilePS5103221.50985142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3085143IPR001471AP2/ERF domain
PRINTSPR003671.7E-98697IPR001471AP2/ERF domain
PRINTSPR003671.7E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MVEKMGHSDQ YSDAISLPTN SIRKRKSRSR RDRSTVAETL AKWKAYNECF DSSNDGGKLI  60
RKAPAKGSKK GCMKGKGGPL NSHCNYRGVR QRTWGKWVAE IREPNRGSRL WLGTFPTAIE  120
AALAYDEAAR TMYGQTARLN LPNIKNRGQL QGILLEDYLG LRNSDSSTTT STCSESTTTT  180
SNQSEVCVPE EFTVRPQLVP LNVKSEDGEG ESRTGDHGDE TATPMCLENQ VKHEDCNGQT  240
AALVAEFPCL DQLQNFQMAE IFEPRTGPQT GPMLTPLSLE KQVKDEDLDA VYRERSDDQA  300
VLSEAGISSL YDLQNFEMDE MFDVEELLSL ISSDSLHDPT NILKGNADGY TSMVPSQVGS  360
IGSEKPPNSS YQMQNPDAKL LGSPQQMERT PADVDYGFDF LKQGREEDLN AAADDCVRYL  420
NEIGDLGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1885142260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-1885149570ATERF1
3gcc_A9e-1885149570ATERF1
5wx9_A5e-1774148378Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12431RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441482.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X1
TrEMBLA0A1S3B4B10.0A0A1S3B4B1_CUCME; dehydration-responsive element-binding protein 2C isoform X1
STRINGXP_008441482.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-32ERF family protein