PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008502P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Nin-like
Protein Properties Length: 234aa    MW: 27719.4 Da    PI: 6.2954
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008502P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.63.3e-25120167552
          RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     + le+++kyF+ pi +AAke++v+lTvLKr+CRq++I+RWPhRk ksl
  MELO3C008502P1 120 LGLEEIRKYFHIPISKAAKEMNVGLTVLKRRCRQLNIMRWPHRKHKSL 167
                     6799****************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.587107189IPR003035RWP-RK domain
PfamPF020421.3E-22120167IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDSNPQTLHN IIPQFDFEWL HEDLFPLHNE LDELPPLDND ELLDVNSRSL LPFHLDDNDV  60
LEFDSEFLSR ELEMVEIERN GFSSTWKEEE EEEEEEEGEK RLRLMGNNNG NKRRKGSFVL  120
GLEEIRKYFH IPISKAAKEM NVGLTVLKRR CRQLNIMRWP HRKHKSLNSL IQNVKEMGLT  180
NEVKGLEEHK RLLEEMPNMD LTHTVKRLRQ ACFKANYKKN RRLRSNNIAS LHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818500.0LN681850.1 Cucumis melo genomic scaffold, anchoredscaffold01597.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466842.11e-169PREDICTED: protein RKD4
TrEMBLA0A1S3CS471e-168A0A1S3CS47_CUCME; protein RKD4
TrEMBLE5GBA61e-168E5GBA6_CUCME; Transcription factor
STRINGXP_008466842.11e-168(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68983247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-41RWP-RK domain-containing protein