PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C008534P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 147aa MW: 17377.9 Da PI: 9.9729

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C008534P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.7	1.4e-50	10	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 GfrFhPtdeelv +yLk+kv+++++++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t+ g+Wkatg+d++++s+ MELO3C008534P1 10 IGFRFHPTDEELVGFYLKRKVQNNSIST-ELIRQLDIYKYDPWDLPKLAWTGEKEWYFYCQRDRKYRNSARPNRVTSVGFWKATGTDRPIYSNsk 103 7***********************99.89***********8777899***********************************854 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +glkk+Lvfy+gra k+ ktdW+mhe+rl MELO3C008534P1 104 sKSIIIGLKKSLVFYTGRACKAIKTDWMMHEFRL 137 44455*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-53	6	142	IPR003441	NAC domain
PROSITE profile	PS51005	49.394	8	146	IPR003441	NAC domain
Pfam	PF02365	2.9E-26	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MEQERNNETI GFRFHPTDEE LVGFYLKRKV QNNSISTELI RQLDIYKYDP WDLPKLAWTG 60 EKEWYFYCQR DRKYRNSARP NRVTSVGFWK ATGTDRPIYS NSKSKSIIIG LKKSLVFYTG 120 RACKAIKTDW MMHEFRLPHS PPNVCT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-48	1	137	3	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681846	1e-154	LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBank	LN713259	1e-154	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441931.2	4e-96	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	4e-72	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3B423	1e-94	A0A1S3B423_CUCME; protein FEZ-like
STRING	XP_008441931.1	9e-96	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-64	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]