PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008908P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 305aa    MW: 31603.8 Da    PI: 9.5835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008908P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-063558225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  MELO3C008908P1 35 KSKPCTKFFSTAGCPFGESCHFLH 58
                    7789******************** PP
2zf-CCCH27.45.8e-09102127227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ f     Ck+Gd+C+FaHg+
  MELO3C008908P1 102 KTRMCNKFNTAEGCKFGDKCNFAHGE 127
                     89**********************96 PP
3zf-CCCH38.12.5e-12271295126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++fa+ G C +G+rC+FaHg
  MELO3C008908P1 271 YKTKLCDNFAK-GSCTFGERCHFAHG 295
                     9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-63359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-83558IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-43558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-1498131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-899131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713100128IPR000571Zinc finger, CCCH-type
SMARTSM003560.027100127IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.94E-16166247IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.1E-17176245IPR004088K Homology domain, type 1
SMARTSM003227.3E-13176246IPR004087K Homology domain
PROSITE profilePS5008414.739177241IPR004088K Homology domain, type 1
CDDcd001052.16E-15179241No hitNo description
PfamPF000136.0E-12179243IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.0E-16266301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-9269300IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8270296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558270297IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDMRKRGRPE AAFNSNGSFK KHKQELESLS TVGSKSKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNVVAQM MNLAPVGAQP SRNVAAPPSV TNGGSSAPSQ VKTRMCNKFN TAEGCKFGDK  120
CNFAHGEWEL GRPNPPSHDN PRAMGGGGGG GGVHMVGRMG GRMDLPPPGP AASFGASATA  180
KISIDASLAG AIIGKGGINS KQICRQTGAK LSIRDHESDP NLRNIELEGT FEQINEASAM  240
VRELIITVSM AGPGKASGGM GGGPAPTGSN YKTKLCDNFA KGSCTFGERC HFAHGAAELR  300
KSGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442098.10.0PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ7F8R01e-105C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3B4W90.0A0A1S3B4W9_CUCME; zinc finger CCCH domain-containing protein 36-like
STRINGXP_008442098.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-53C3H family protein