PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009231P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 672aa    MW: 75971.5 Da    PI: 5.1089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009231P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000154945331255
                     H.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 R.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R R+ i +++ eLr+++P+      +K s    Lek+++++ +Lq
  MELO3C009231P1 494 RdRQLIQDRIKELRQIVPNG-----GKCSIDGLLEKTIKHMLYLQ 533
                     447889************98.....899999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-186159IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00185478534No hitNo description
Gene3DG3DSA:4.10.280.107.9E-5481547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-6483548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.718483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
METLSLNHLL KSLCTHSQWI YAVFWKIKYQ TPPILTWEDG YCNYPKVEKH TGNMEYRMIR  60
GFDHVTSYYG TNIYDGDSGS CSVEPAVADM FCLQYALGEG TVGSAASSGN HSWVFLEDIF  120
TSNLSSASIY EGPTEWIIQY ASGIKVTENL SVVAYIKDRF NDINFVDGAC ASVVPRPFES  180
LDEQTNFTTY MLEAENHGAI HDIKPPVSTL NQCAIQDVLT VSRRIRPETV HCEKGHKNDI  240
QRTNMEELFA PLYQSVSTGE VEFSDFISLE SLLPLGSQLR NHETGLFESN PHVFHSNSVD  300
NVVEQQSGHN LVTKKEYGIA DNFFSFPDDC ELQKALGPVL LAQKPTNEFS YDPSSTIRDT  360
TSSLFCSRDF KEGDIEYLLE AMITAEDISD DAFSNNTINA RIADLVAKPR LSTNTCQSES  420
STIVVDDLAL WNIPESTTTA TGRKNLTSLS KSNSLVVNER EEHGRDMAQH RKGMKRSNSS  480
RKIKVTSNTR QRPRDRQLIQ DRIKELRQIV PNGGKCSIDG LLEKTIKHML YLQRVTDQAE  540
KLKQLAQQED FDSENCTDLE NEGVQPNGTS WTWAFDIGSE LQVCPIVVED LEYQGHILIK  600
MLCNDMGLFL EITQIIRGLD LTILKGVIER HSNNSWAYFI VEAPRGFHRM DVFWPLMHLL  660
QRKRNPISCR I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442512.10.0PREDICTED: transcription factor bHLH155-like
TrEMBLA0A1S3B5V20.0A0A1S3B5V2_CUCME; transcription factor bHLH155-like
STRINGXP_008442512.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1071233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-47conserved peptide upstream open reading frame 7