PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009236P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 336aa    MW: 38877.2 Da    PI: 4.7317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009236P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.72.7e-2061371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lp Gf F Ptdeel+ +yL +kv g++ +l e ++ +d+y +eP+++  k+   +++++yfF++ +kk+++  rk    +  +W+   + ++v+s
  MELO3C009236P1   6 LPLGFTFCPTDEELLGYYLFNKVLGEQAPLLE-LPVIDLYIHEPSEIWqKCGGVDKQDVYFFTTLKKKKSRIIRKVG-SNGNTWSCENRARQVFS 98 
                     699************************99954.9*************734444577799******999875544444.35568************ PP

             NAM  95 k..kgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                     +  ++ l g  k + + k +a++ +    ++W+m ey+l
  MELO3C009236P1  99 StiDHLLLGSVKRFHYQKPKAKDCTdinDCTWIMYEYTL 137
                     87777779********977776654344899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-264159IPR003441NAC domain
PROSITE profilePS5100527.6636159IPR003441NAC domain
PfamPF023659.4E-147137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDPSMLPLGF TFCPTDEELL GYYLFNKVLG EQAPLLELPV IDLYIHEPSE IWQKCGGVDK  60
QDVYFFTTLK KKKSRIIRKV GSNGNTWSCE NRARQVFSST IDHLLLGSVK RFHYQKPKAK  120
DCTDINDCTW IMYEYTLDPS IVPKGLVHDS YVLCMIRKKI VKSQKIVMTS KKRQISSNWP  180
TTSMHVDDQT HKHRRLEEND VVDLQKEYCC IDAPIECPTT TQMESCNQGL SNDDHLIFAK  240
EIEMEIERCN HVELSNVEDG LIMTRLEEKD VVDLQKECCI DVAIGCPIEL CRQDLSNDDD  300
LIFAKAIENE IERYNNMEQS NVEDGSNYDN EWYFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443570.10.0PREDICTED: NAC domain-containing protein 105-like
TrEMBLA0A1S3B8F10.0A0A1S3B8F1_CUCME; NAC domain-containing protein 105-like
STRINGXP_008443570.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-17NAC domain containing protein 52