PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009332P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 498aa    MW: 54058.3 Da    PI: 9.8577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009332P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056587123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  MELO3C009332P1 65 FICEICNKGFQRDQNLQLHRRGH 87
                    89*******************88 PP
2zf-C2H212.10.00058142164123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  MELO3C009332P1 142 WKCDKCSKKYAVQSDWKAHSKTC 164
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-76487No hitNo description
Gene3DG3DSA:3.30.160.601.3E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.9E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456587IPR007087Zinc finger, C2H2
SMARTSM003550.0226587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355100107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.58E-7137162No hitNo description
SMARTSM00355150142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSTNPFSLLS STNTSFPHQQ DANPNPKPKP SAAAAKKKRN LPGTPDPDAE VIALSPKSLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTNKE PIKKKVYICP EKTCVHHDPS  120
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  180
DSFITHRAFC DALAEESARI TTVSATNILN NLRNDSNNIN LLHQQADHHQ PLIDHHQSLG  240
DISGLSQFTN HSDHFLRDFE DHQQKNRSPL SLWLNQASAE NAINNNNNIS NFFGASSSSS  300
NLFGSITENG LSMLPVMEKE DVENKGSNNN FSKATSSSAA ALLSGQSSQS VVSSSPMSAT  360
ALLQKAALMG STRSSNNNNS PLFGSGAFGV MSSSSSLSSS SSSNAVSSLN SFNKSRSLTM  420
ADSVQMIGSN SDLSSNCLSQ LLIPPNGNNA MRSSGQTRDF LGVGGGEAPR PPFLPPELAK  480
FTTINSTMGL SQFAANH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-38138207372Zinc finger protein JACKDAW
5b3h_F3e-38138207372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442674.10.0PREDICTED: protein indeterminate-domain 9
TrEMBLA0A1S3B7060.0A0A1S3B706_CUCME; protein indeterminate-domain 9
STRINGXP_008442674.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-101C2H2-like zinc finger protein