PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C009376P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB

Protein Properties

Length: 129aa MW: 15459.9 Da PI: 11.2995

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C009376P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.1	4.1e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W + Ed +l v+++G + W++Ia+ g+ R++k+c+ rw++yl MELO3C009376P1 14 RGPWLEAEDRQLTIFVTRMGERKWDLIAKASGLERSGKSCRFRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	49.8	7.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r+r eE+e++++++k++G++ W++Ia+ ++ gRt++++k++w+++l MELO3C009376P1 67 RDRINSEEEEIILKLHKKWGNK-WSRIAQWLP-GRTDNEIKNYWRSHL 112 567789**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.155	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.98E-26	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-11	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-19	15	68	IPR009057	Homeodomain-like
CDD	cd00167	5.53E-6	16	61	No hit	No description
PROSITE profile	PS51294	23.139	62	116	IPR017930	Myb domain
SMART	SM00717	1.6E-12	66	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-22	69	115	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-13	72	112	IPR001005	SANT/Myb domain
CDD	cd00167	6.17E-9	73	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MANQSALQTE RLRRGPWLEA EDRQLTIFVT RMGERKWDLI AKASGLERSG KSCRFRWLNY 60 LRPNLKRDRI NSEEEEIILK LHKKWGNKWS RIAQWLPGRT DNEIKNYWRS HLRKKFPIQL 120 EGSRKTLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-26	12	116	2	105	C-Myb DNA-Binding Domain
1msf_C	2e-26	12	116	2	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-68	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-68	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442723.1	6e-84	PREDICTED: transcription factor MYB114-like
Swissprot	Q4JL76	7e-47	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	A0A1S3B717	1e-82	A0A1S3B717_CUCME; transcription factor MYB114-like
STRING	XP_008442723.1	2e-83	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13169	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	2e-44	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]