PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C009378P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 250aa MW: 27322.6 Da PI: 7.4201

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C009378P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H MELO3C009378P1 89 YQCKTCDRCFPSFQALGGHRASH 111 9***********99999998887 PP
2	zf-C2H2	14.1	0.00014	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H MELO3C009378P1 169 HECSICGAEFSSGQALGGHMRRH 191 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.86E-9	89	111	No hit	No description
SMART	SM00355	0.077	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.847	89	116	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.2E-10	89	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.86E-9	164	191	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.5E-4	167	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	6.1E-13	168	192	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	169	191	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	169	191	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	171	191	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MAETPDENQA QIIKGKRTKR LRPSSVSSTS SSADCSSSSA GLTEEEEEDQ DLANCLILLA 60 QGRSRITEGC SSVFVEQKLV AANESLFLYQ CKTCDRCFPS FQALGGHRAS HKKPKFFNNV 120 IANSVEQQQQ QQENNFTTSN SIQLSLQLST ASRPPPPPTA GDLIKSKVHE CSICGAEFSS 180 GQALGGHMRR HRTLTATTTR PITTSTPQFI KKERNMLELD LNLPAPEDDR HRPPVAVFST 240 ASPLVDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442730.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1S3B5W6	0.0	A0A1S3B5W6_CUCME; zinc finger protein ZAT5-like
STRING	XP_008442730.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-40	C2H2 family protein