PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009430P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 298aa    MW: 32513 Da    PI: 4.3097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009430P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05270293123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C+++F +   L++H +  H
  MELO3C009430P3 270 FPCKTCNRTFGSETALQSHTKAkH 293
                     89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-6269293IPR007087Zinc finger, C2H2
SMARTSM003550.0021270293IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695270297IPR007087Zinc finger, C2H2
PROSITE patternPS000280272293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEFWGAEVKV GEPLLVSPGE EKILHLSQVG NQKLVLGTLS SEKFPQVSFD LVFDKEFELS  60
HNWKNGSVHF TGYTSLLPEE EESTYTDSEE DFPLAVTDNG KPEPEPKKDA KPDTSGTKKK  120
VQIVEPNKVA SNSNIDSKKN EDSSDEDDDE DEESTDDENE NGGEEDDTDD DENESSGVDS  180
EDSDEDSDDS LEEDEQTPKK AEASKKRPLD SANKTPAPDK KAKLVTPQKT DGKKGVAHVD  240
TPHPSKKAGK MPAANDKTKQ QTPKSANAAF PCKTCNRTFG SETALQSHTK AKHTADK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818412e-93LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132582e-93LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442794.11e-174PREDICTED: histone deacetylase HDT1
TrEMBLA0A1S3B6261e-172A0A1S3B626_CUCME; histone deacetylase HDT1
STRINGXP_008442794.11e-173(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-26histone deacetylase 3