PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009442P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 203aa    MW: 22484.6 Da    PI: 7.5071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009442P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.2e-133685256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ykGVr++  +g+Wv+e+r p   +k+ +f++g+f +++ Aa a++  +++++ge
  MELO3C009442P1 36 IYKGVRQR--NGKWVCELRQP---NKKSSFWVGTFCSPKTAAIAYDVVALAIKGE 85
                    69***975..6******9998...347**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-83585IPR001471AP2/ERF domain
CDDcd000184.46E-203593No hitNo description
SMARTSM003807.9E-163698IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-213693IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-143692IPR016177DNA-binding domain
PROSITE profilePS5103215.8043692IPR001471AP2/ERF domain
PRINTSPR003676.6E-53748IPR001471AP2/ERF domain
PRINTSPR003676.6E-57494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MPSSSSSSTN DHLPPPTTVA KRKAGRKKFQ ETRHPIYKGV RQRNGKWVCE LRQPNKKSSF  60
WVGTFCSPKT AAIAYDVVAL AIKGESVSLN FPNFAHSFPR VMSSSSSIND IRAMAIKTAE  120
TFTSSDIMMP LSSPSSPSSL CSLMSEEKVV PNYFWDEEEV FNMPAIIAGI AEGLIITPPG  180
MKREFDWEDS ENTMELSLWS HE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442807.11e-149PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLA0A1S3B6L01e-147A0A1S3B6L0_CUCME; dehydration-responsive element-binding protein 1F-like
STRINGXP_008442807.11e-148(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-33C-repeat/DRE binding factor 1