PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009632P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 226aa    MW: 23483.7 Da    PI: 9.1716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009632P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-063153325
                    S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                     + C+ +     Ck+Gd+C+FaH
  MELO3C009632P1 31 SRMCNKYNSAEGCKFGDKCHFAH 53
                    567888888889*********** PP
2zf-CCCH37.15.4e-12192216126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC++fa+ G C +G+rC+FaHg
  MELO3C009632P1 192 FKTKLCDNFAK-GSCTFGERCHFAHG 216
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-72758IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-122860IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0142956IPR000571Zinc finger, CCCH-type
SMARTSM003560.643055IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.41E-1689168IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.0E-1896165IPR004088K Homology domain, type 1
SMARTSM003222.3E-1296166IPR004087K Homology domain
PROSITE profilePS5008414.73997161IPR004088K Homology domain, type 1
CDDcd001058.91E-1699162No hitNo description
PfamPF000134.4E-1299163IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.109.3E-16189222IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7191217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164191218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8191221IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMNLPPAPPA PRNMGAPPPM SNGSATQVVK SRMCNKYNSA EGCKFGDKCH FAHAEWELGK  60
PSAPSHDDPR SLGHIPNRLA NRMDAAPPAL AASFGASSTA KISVDASLAG AIIGKGGINS  120
KQICRRTGAK LSIRDHESDP NLRNIELEGS FDQIKEASAM VQELILTVSM AGPPKSAIGA  180
TGGTAGPAGN NFKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSGM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443064.11e-164PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ37e-81C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A1S3B7851e-163A0A1S3B785_CUCME; zinc finger CCCH domain-containing protein 14-like
STRINGXP_008443064.11e-164(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-57C3H family protein