PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009632P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 296aa    MW: 31067.3 Da    PI: 9.494
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009632P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06101123325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      + C+ +     Ck+Gd+C+FaH
  MELO3C009632P2 101 SRMCNKYNSAEGCKFGDKCHFAH 123
                     567888888889*********** PP
2zf-CCCH36.67.7e-12262286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC++fa+ G C +G+rC+FaHg
  MELO3C009632P2 262 FKTKLCDNFAK-GSCTFGERCHFAHG 286
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.53461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-63461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3893462IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-83559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-797128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-1298130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.01499126IPR000571Zinc finger, CCCH-type
SMARTSM003560.64100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.5E-16159238IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-17166235IPR004088K Homology domain, type 1
SMARTSM003222.3E-12166236IPR004087K Homology domain
PROSITE profilePS5008414.739167231IPR004088K Homology domain, type 1
CDDcd001052.09E-15169232No hitNo description
PfamPF000137.1E-12169233IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.4E-15259292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164261288IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7261287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8261291IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDTRKRGRPE VGLNANGGLK KSKQEMEYLS TGVASKSKPC TKFYSTTGCP FGEACHFLHY  60
VPGGYNAVAQ MMNLPPAPPA PRNMGAPPPM SNGSATQVVK SRMCNKYNSA EGCKFGDKCH  120
FAHAEWELGK PSAPSHDDPR SLGHIPNRLA NRMDAAPPAL AASFGASSTA KISVDASLAG  180
AIIGKGGINS KQICRRTGAK LSIRDHESDP NLRNIELEGS FDQIKEASAM VQELILTVSM  240
AGPPKSAIGA TGGTAGPAGN NFKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSGM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443064.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-113C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3B7850.0A0A1S3B785_CUCME; zinc finger CCCH domain-containing protein 14-like
STRINGXP_008443064.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-55C3H family protein