PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009653P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 370aa    MW: 40957.8 Da    PI: 6.096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009653P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08211258455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  MELO3C009653P2 211 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 258
                     8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-15205276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-8205262No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14207275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6211258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEIKVGTVGG SSTIGRQSDD TGLESLQFCE EIQGLMTIPA ENASSFTALL ELPATQALEL  60
LHSPDSAAAA VVNDDSVHHC IKDVPKPYFS AFNCNLTFPT NSGLIERVTK LSILAKEHSP  120
ETTSSVPLNS SVNFEKVKNE PTTDTDSNPN PLQTLISDPK VENTNQRSAK RKEREKKGRG  180
STKKSKNESN EDAEKLPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCNKI  240
SGTALVLDEI INHVQSLQRQ VEFLSMRLAA VNPRVDFNIE SILATENEPI LESNFPTMVS  300
PLMWPEIPVN GTRQQYQPQW HFDGSVNQQG WARDEHNHHN FSPPENSLLS YDSSANSASL  360
HSNQLKMEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443095.10.0PREDICTED: transcription factor bHLH48
SwissprotQ3EAI11e-95BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A1S3B8150.0A0A1S3B815_CUCME; transcription factor bHLH48
STRINGXP_008443095.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]