PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009657P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 356aa    MW: 41141.7 Da    PI: 6.504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009657P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05174193120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  MELO3C009657P1 174 FSCPVCYKTFNRYNNMQMHM 193
                     89*****************9 PP
2zf-C2H214.50.0001258280123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  MELO3C009657P1 258 FMCRKCGKAFAVRGDWRTHEKNC 280
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.49E-5170196No hitNo description
Gene3DG3DSA:3.30.160.606.2E-6174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743174201IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-6240278No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6245278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808258278IPR007087Zinc finger, C2H2
SMARTSM0035549258278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDDPSTNFFF TNLFKFNSPT TTSFHPSSSS SSDPLLPPPL PQPNFFPTFH HAPPPPPSSP  60
PLRQALPLLR LSPTRSSSQE KNNNIKELDD EKEETLMRVA LHIGLPSSRD QEIEDEEEED  120
QEIEYEEEEE LEELEEEEEE EVAISGLCLS NSRLNKGQYW IPTPSQILIG PTQFSCPVCY  180
KTFNRYNNMQ MHMWGHGSQY RRGPESLRGT QPTGMLRLPC YCCSPGCRNN IDHPRAKPLK  240
DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD  300
HIKAFGNGHA AYNHSSNNNN NNNPDLHLHR LHHRRQRFDN EEDDHAYSEV EQDHD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443097.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S3B7910.0A0A1S3B791_CUCME; zinc finger protein WIP2-like
STRINGXP_008443097.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]