PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009744P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 220aa    MW: 23822.4 Da    PI: 9.0738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009744P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00054062123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C++ Fs+   L  H++ H
  MELO3C009744P1 40 FYCKFCSRNFSNLQALGGHQNAH 62
                    79*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.9E-63767No hitNo description
PROSITE profilePS5015711.1984067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSSSDKSNAS DHERNYNQDS FKESEQPETE AKAKEETRVF YCKFCSRNFS NLQALGGHQN  60
AHKRERDIAK REKAAAAAAA AGGRTTDVFD SIGSFYHPYY SVMAIHSLRN KSPGFPIRPQ  120
SVIRKPSRSR VELSGGGATA AAAAAAAAYG YRWWPREQYM AALAAAQQQQ IQSGGLLQGF  180
NNGFESIAME NINASSSSSP QIFGADQCIV NGLDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM8547700.0HM854770.1 Cucumis melo subsp. melo clone Cm06_A03, complete sequence.
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443609.11e-163PREDICTED: uncharacterized protein LOC103487164
TrEMBLA0A1S3B7Y91e-161A0A1S3B7Y9_CUCME; uncharacterized protein LOC103487164
TrEMBLE5GBP21e-161E5GBP2_CUCME; Zinc finger protein
STRINGXP_008443609.11e-162(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2475033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-13zinc finger protein 3