PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009804P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 186aa    MW: 20841.4 Da    PI: 10.06
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009804P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.4e-1473129155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  MELO3C009804P1  73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDEEEAAARAYDLAALKYWG 129
                     57*******************66667777755555********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-1073129IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1573138IPR016177DNA-binding domain
SMARTSM003801.8E-1974143IPR001471AP2/ERF domain
PROSITE profilePS5103218.46574137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1274138IPR001471AP2/ERF domain
PRINTSPR003671.1E-57586IPR001471AP2/ERF domain
PRINTSPR003671.1E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASSSSDPGF KHEPGACSTA AAGRGTAESS EVVMANDQLL LYRGLKKAKK ERGCTAKERI  60
SKMPPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQGAY DEEEAAARAY  120
DLAALKYWGP GTLINFPVTD YTRDLEEMQN VSREEYLASL RRKSSGFSRG ISKYRSLSRY  180
FFFPC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-131LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-131LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443317.11e-116PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK23e-84AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1S3B7931e-115A0A1S3B793_CUCME; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_008443317.11e-116(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-82AP2 family protein