PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009805P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 255aa    MW: 29689.9 Da    PI: 8.457
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009805P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-34271182102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y ++ed+ ++++isw+++g++f+v+++ efa ++Lp+ Fkh+nf+SFvRQLn+YgF+k+ +++         weF +++Fkkg ke l++
  MELO3C009805P1  27 FLTKTYMLVEDPMTDNVISWNSDGTTFIVWQPPEFAIDLLPTLFKHNNFSSFVRQLNTYGFRKIATSR---------WEFYNDKFKKGCKERLCE 112
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  MELO3C009805P1 113 IRRRKA 118
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-3521111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-4923116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-3224116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGEAMVSLGN VCEESIAVVS EPTPSPFLTK TYMLVEDPMT DNVISWNSDG TTFIVWQPPE  60
FAIDLLPTLF KHNNFSSFVR QLNTYGFRKI ATSRWEFYND KFKKGCKERL CEIRRRKAWT  120
NKRKHNSNAK AIQVTHQDNH DEDQRSLSTS SSDDQYTMLA YENKKLKKEN GVLSFELTNM  180
KKKCRELLDL VAKYEFMVIN GNEKKEDEIM LKPNLKLFGV QLEVEEEDEM EIKQNKRKRS  240
IHPNKPFLLS QTCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-1811163129Heat shock factor protein 1
5d5v_B4e-1811163129Heat shock factor protein 1
5d5v_D4e-1811163129Heat shock factor protein 1
5d5w_B3e-18251162104Putative transcription factor
5d5x_B3e-18251162104Putative transcription factor
5d5x_E3e-18251162104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443318.10.0PREDICTED: heat stress transcription factor B-3-like
SwissprotO222305e-63HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S3B7P70.0A0A1S3B7P7_CUCME; heat stress transcription factor B-3-like
STRINGXP_008443318.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-64heat shock transcription factor B3