PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009980P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 288aa    MW: 33310.1 Da    PI: 5.9111
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009980P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.71.3e-20161493128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLpkkvka.eekewyfFskrdkkyatgk....rknra..tksgyWkatgkd 89 
                     +G++F+Ptd++l+ +yL+ k+ +++     ++ ++d+y  +ePw++ +++k+ + +++yfF+k +++++++     + nr+   ++g+W+   + 
  MELO3C009980P1  16 VGVKFRPTDQQLL-RYLCCKIYDQPYFQ-GAVFDFDLYGgIEPWEIWQSFKGiDGEDLYFFTKLKRSTTNSGnlstHINRKigSANGTWSGENSA 108
                     7************.9**********655.689999999637*****865555377899*****99999864323336666523459********* PP

             NAM  90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++++   +++ +g +k + +  +++ + ++ +W+mhey+l
  MELO3C009980P1 109 TPIYANeddHEQIIGYRKRFRYE-NDQLQEHHGEWIMHEYSL 149
                     ****998877788********97.6666669*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-2413170IPR003441NAC domain
PROSITE profilePS5100523.84614171IPR003441NAC domain
PfamPF023654.6E-1516149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDSSSGYLPL PFSHCVGVKF RPTDQQLLRY LCCKIYDQPY FQGAVFDFDL YGGIEPWEIW  60
QSFKGIDGED LYFFTKLKRS TTNSGNLSTH INRKIGSANG TWSGENSATP IYANEDDHEQ  120
IIGYRKRFRY ENDQLQEHHG EWIMHEYSLH QDHLKCQGVD PNYVLCRIRK NERAKRKLKV  180
QRELKQPNKK RIMAPDQLQP INHGVITRET IYNSNIMHDM TTHQDTSVVD HVTNMTTNQD  240
NTNASTSLGA LCLTCTPTND EWKDIINLDE LDDIDFSSYV PNNFDET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443554.10.0PREDICTED: protein SOMBRERO-like
TrEMBLA0A1S3B9410.0A0A1S3B941_CUCME; protein SOMBRERO-like
STRINGXP_008443554.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-12NAC domain containing protein 38