PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C009989P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 178aa MW: 19508.7 Da PI: 7.7601

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C009989P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.8e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC +dCv+apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+ MELO3C009989P1 10 PCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ MELO3C009989P1 105 ATNA 108 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.626	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MSSSTYSNSP CAACKFLRRK CLPDCVFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVQP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS ILQRQVIKLQ KELDATNADL IRYACSEMPA 120 PSPSSSSQYA RRSSSTSHEG SSSTSSYGHY YTGLYFSPWS NNNNGPCGDG HDKGEYK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-68	7	118	8	119	LOB family transfactor Ramosa2.1
5ly0_B	9e-68	7	118	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008443563.1	1e-131	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	3e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A0A0LI15	1e-129	A0A0A0LI15_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3B938	1e-129	A0A1S3B938_CUCME; LOB domain-containing protein 25-like
STRING	XP_008443563.1	1e-130	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-69	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]