PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010064P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 226aa    MW: 24792.3 Da    PI: 9.1187
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010064P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.6e-121844127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  MELO3C010064P2 18 PGEPDCSYYIRTGLCRFGATCRFNHPP 44
                    5789*********************97 PP
2zf-CCCH33.19.7e-118099827
                    GGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                    ++++tGtCk+G++CkF+H++
  MELO3C010064P2 80 YYLKTGTCKFGATCKFHHPR 99
                    9*****************96 PP
3zf-CCCH37.34.7e-12121145327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C +++rtG+Ck+G++CkF+H++
  MELO3C010064P2 121 ETECAYYLRTGQCKFGNTCKFHHPQ 145
                     578********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-51744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5871745IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-81944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-52245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-42343IPR000571Zinc finger, CCCH-type
SMARTSM003560.436599IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.44170100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-48099IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-88099IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103118146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7119146IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10121145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5124144IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNLGSGEIMG SGSYPVRPGE PDCSYYIRTG LCRFGATCRF NHPPNRELAI ATARMKGEFP  60
ERIGQPECQA CSYFIIFTNY YLKTGTCKFG ATCKFHHPRD KAGIAGRVAL NILGYPLRPS  120
ETECAYYLRT GQCKFGNTCK FHHPQPTNMM VSLRGSPIYP TVQSPTPGQQ SYPGGSTNWS  180
RASFIPSPRW QGPSSYASLI LPQGVLSVPG WNAFNVSPIP YPCLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818081e-180LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132561e-180LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660227.11e-146PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_016899804.11e-147PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016899805.11e-147PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF91e-122ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4DVR11e-145A0A1S4DVR1_CUCME; zinc finger CCCH domain-containing protein ZFN-like isoform X2
TrEMBLE5GBK31e-145E5GBK3_CUCME; Nucleic acid binding protein
STRINGXP_008443710.11e-145(Cucumis melo)
STRINGXP_004142565.11e-146(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-104zinc finger protein 1