PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010064P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 182aa    MW: 19868.4 Da    PI: 5.6268
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010064P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.2e-134369127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    +++++C+f+++tG Ck+G+ C+F+H++
  MELO3C010064P3 43 PGQPECQFYMKTGDCKFGAVCRFHHPR 69
                    5789*********************96 PP
2zf-CCCH41.81.8e-1389115127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  MELO3C010064P3  89 PGEPLCIFYSRYGICKFGPSCKFDHPM 115
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.8E-64269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5964270IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-94469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-64671IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-54870IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-788115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.70988116IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-1190115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-493113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MFALYSYLYY ILNSSFGCMD QLGSVSSSES PQQTRENVFP ERPGQPECQF YMKTGDCKFG  60
AVCRFHHPRE RVLPAPDCVL SPIGLPLRPG EPLCIFYSRY GICKFGPSCK FDHPMGIFTY  120
NLSAASSANA PVQHLFGTSS GTTALNLSSE GLVEAGSAKP RRLSISETRE MPSDDENDAE  180
G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818081e-155LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132561e-155LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899804.11e-114PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016899805.11e-114PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF93e-81ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4DUZ31e-112A0A1S4DUZ3_CUCME; zinc finger CCCH domain-containing protein ZFN-like isoform X1
TrEMBLA0A1S4DVR11e-112A0A1S4DVR1_CUCME; zinc finger CCCH domain-containing protein ZFN-like isoform X2
TrEMBLE5GBK31e-112E5GBK3_CUCME; Nucleic acid binding protein
STRINGXP_004142565.11e-113(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-59zinc finger protein 1